GE remote controlling wrong scenes?

I have one of those cheap common 9 switch GE remotes (can’t remember the number) and things worked well for awhile. This controls a vera 3.

Now for some reason things are all screwed up. When I press a button to turn on one light, two come on. When I turn one light off another comes on. It is all screwed up and I did nothing to change it. If I go into the control panel or whatever it is called and try to suss it out I can’t see any problem. If I go to the GE device all of the scenes list out like they should be. If I go to the module setting and look there only one scene button is assigned. It looks ok but then again the UI is so disjointed and confusing that maybe I missed something.

Does anyone have an idea of what is wrong?